Recombinant Protein Expression in E.coli 

Our comprehensive Protein Expression in E.coli Service Package covers everything from cloning to high-purity protein purification. With extensive expertise in bacterial protein expression, we deliver reliable support for your research—whether it’s a standard protein or a challenging target.

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Recombinant Protein Expression in E.coli Service Package

  • Final protein yield starting at 1 mg with >90% purity
  • Complete workflow – from cloning to purified protein – in just 4 weeks
  • Reliable data and process foundation for future upscale and customized solutions
  • Available with high-throughput and large-scale production capabilities
  • High quality service for Recombinant Protein Expression in E.coli
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Workflow of Bacterial Protein Expression (E.coli)

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Process of Recombinant Protein Expression in E.coli

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Feasibility Analysis

We offer different levels of serum-free adaption of your protein:

  • Chemical defined
  • Xeno-free
  • Animal-component-free

In this phase of the project, you define your needs and our experts will suggest you one or more reasonable medium compositions.

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Quote and Project Plan

  • After your individual project requirements have been discussed, our scientific experts run an initial feasibility check with your protein sequence (e.g. literature check, database check, product check, etc.) to define the ideal service strategy for this specific target.
  • The detailed quote for the project is sent to you via e-mail or by secure data transfer of choice.
  • The project will start within one working day after order confirmation – from this point of time our dedicated project management team keeps you constantly informed throughout the project to ensure maximum success.

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Template DNA

  • Template DNA delivered from client: plasmid DNA containing the codon optimized DNA of the POI (Protein of interest)
  • Easy alternative - Gene Synthesis Service by trenzyme: Gene synthesis of codon and DNA structure optimized DNA (available as add-on).

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Plasmid Generation & Cloning

  • PCR based cloning or direct cloning of target DNA into trenzymes’ proprietary expression vector(s)
  • Isolation of plasmid DNA
  • QC of final construct by DNA sequencing

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Small Scale Pilot Study

To achieve maximum efficiency and save the customer significant time and money, we run a small scale pilot study. These preliminary assessments help us determine in advance whether the target protein expression in E.coli is possible and whether the purification process is feasible. For validation, we follow the steps outlined below:

  • Transformation of construct into E.coli expression strain
  • Generation of cryostock
  • Small-scale protein expression in culture
  • Small-scale purification by cell lysis and affinity chromatography (batch mode)
  • Validation of successful target protein purification by SDS-PAGE and Western Blot analysis
  • Compilation of documentation of pilot study
  • Guarantee: After a successfully completed pilot study, the outcome of this service package (purity and yield) is guaranteed
  • Flexibility and Efficiency: If expression and purification is not feasible as desired, the project can be stopped at this point. Therefore, no further costs and time are incurred. However, we won't leave you alone with your demanding target - our ➥Custom Protein Production Service provides a huge variety of highly customized solutions in order to achieve the project goal under modified conditions.

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Production: Protein Expression

Protein expression in shake flask culture according to trenzyme's optimized standard protocol (up to 4 L cultivation volume - Higher yield possible via ➥Custom Protein Production Service ).

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Production: Protein Purification

  • One-step purification of soluble target protein from culture pellet at 1 ml affinity resin scale according to data from the pilot study
  • Buffer exchange into standard buffer

Final guaranteed yield: 1 mg and purity: 90%

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Final Quality Control of Protein

  • Analysis by SDS-PAGE
  • Assessment of final concentration and purity
  • Compilation of comprehensive datasheet

In case we are able to produce more than the guaranteed final amount of target protein, the excess protein can be purchased.

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Shipment of Your Protein

  • Fast and reliable worldwide delivery
  • Our logistics specialists and trusted shipping partners guarantee that your products reach you in excellent condition and without any loss of quality
  • Collaboration with established global courier services operating an extensive logistics network
  • Full shipment transparency through continuous parcel tracking; you will receive the tracking code once your order is dispatched
  • Proteins and cell lines are typically shipped on dry ice to maintain stability and quality. Upon request, we can also arrange alternative shipping options such as dry shippers, blue ice, or ambient temperature transport
  • We handle every delivery responsibly, as environmental sustainability and climate protection are central values of our company (see ➥ Code of Conduct).

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Deliverables

Together with your cryopreserved cells you will obtain comprehensive documentation including

  • Data sheet with exact culture conditions and media compositions
  • Growth rate documentation
  • Optional: a full report about the whole adaption process

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Timeline

The timeline very much depends on the cell line, the doubling rate of the cells and on the type of medium (low or high nutrient content) to which the cells shall be adapted. Therefore, timeline ranges from 6 to 12 weeks.

What Our Clients Say About Us

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“(…) trenzyme has been a reliable, flexible, and innovative outsourcing partner. (…)”

Dr. C. Smerling, 3B Pharmaceuticals GmbH

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trenzyme's Protein Service includes the following points. Open Hand with vial.

Recombinant Protein Expression in E.coli Service Package for Standard Protein Targets Includes

  • All steps from cloning to purification
  • Final yield: starting at 1 mg purified protein (more on request)
  • Final purity: > 90 %
  • Short processing time (for standard proteins): 4 business weeks including cloning, expression, purification and QC
  • As starting material we can either use an existing expression vector construct from the client or start with codon-optimized gene synthesis (additional service option).
  • Free initial consultation on your individual project by our experienced protein experts at PhD level
  • Small scale pilot study for evaluation of manufacturability
  • Delivery of test samples from pilot study if desired
  • Use of an optimized and reliable E coli protein expression system
  • Comprehensive datasheet

Additional Service Options:

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trenzyme’s E. coli Recombinant Protein Production Service – Your Benefits

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Guarantee – Pay Only When We Succeed!

After feasibility analysis and sucessful pilot study we guarantee the final quantity and purity of your desired target protein in the given timeframe. You only pay when we succeed!

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Comprehensive Service Package

Comprehensive service package for recombinant protein expression and purification for a fixed price and a fixed scale.

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Transparency & High Quality

Our dedicated project management will guide your project through every step of the process and keep you constantly informed on the progress. Transparency and high quality service are our mission.

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Free Feasibility Analysis & Consulting

Our free feasibility check of your protein sequence is the basis for our free individual consultation with you to define the ideal service strategy for your target that will lead to success.

Standard Protein or Challenging Target – Evaluated by Feasibility Check and Pilot Study

During initial free individual consulting, our scientific experts run a feasibility check (e.g. literature check, database check, product check, etc.) with your protein sequence to define the ideal service strategy for your specific target.

To achieve maximum efficiency and save you significant time and money, we additionally run a small scale pilot study in this service process. These preliminary assessments help us determine in advance whether the target protein expression in E.coli is possible and whether the purification process is feasible. If desired, we will provide you with test samples to check the functionality and quality of the purified target protein in your hands.

The big benefit for you: After pilot scale evaluation we guarantee the final yield, purity and timeline – you only pay the production run when we succeed!

  • If your target sequence is determined as challenging protein or you requested a high yield production (> 10 mg), we offer highly modular and custom-tailored solutions.
Protein Expression and Purification Service_Decision Path

Recombinant Protein Expression Service in E.coli
Application Note: Recombinant expression of 15N-labeled protein in E.coli by high cell density cultivation

Preview of trenzyme´s Application Note: Recombinant Protein Expression in E.coli
For More Science and Insights Click Here
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FAQs for Recombinant Protein Expression in E.coli

Can you provide a corresponding antibody for a recombinant protein?

If you need both, your recombinant protein and a corresponding antibody, our guaranteed antibody package will be the best service choice for you.

How will proteins expressed in E.coli be shipped?

Our standard priority shipment will be on dry ice. If required, we offer shipment on blue ice, at -20°C or even at room temperature (lyophilized proteins only) as well.

Are recombinant proteins and antibodies sterile?

We can additionally offer sterile filtration if you require this service.

What are the advantages of protein expression in E.coli compared to other expression systems?

E.coli is a widely used host for protein production due to its cost-effectiveness, especially when scaling up to larger production volumes. The expression processes are typically fast, straightforward and can be easily and economically scaled up. This makes E.coli an efficient choice for many applications.

Can eukaryotic targets be expressed in E.coli?

Yes, eukaryotic proteins can be synthesized in E.coli. However, certain limitations may arise due to the need for post-translational modifications such as glycosylation, complex folding processes and the formation of physiologically correct disulfide bonds. These factors can impact the successful production of a functional target protein.

Is secretion of a target protein into the periplasm possible in E.coli, and what are the benefits?

One key advantage of E.coli as a Gram-negative bacterial host is its ability to secrete proteins into the periplasmic space, which provides an oxidizing environment that promotes the correct formation of disulfide bonds. This can enhance proper protein folding and solubility, making it a cost-effective and efficient strategy for producing structurally complex or even eukaryotic proteins in E. coli. Additionally, periplasmic secretion can be a promising approach for expression of challenging or potentially toxic targets.

Is co-expression of multiple proteins possible in E.coli?

Yes, co-expression in E.coli allows the production of heterodimers, oligomers, and multiprotein complexes, enabling the synthesis of more complex target architectures. Furthermore, co-expression of enzymatically active interaction partners can facilitate specific modifications, such as targeted biotinylation of recombinantly produced proteins. The co-expression of molecular chaperones or folding helpers can also improve the solubility and stability of complex target molecules.

See General FAQs
reinhold-horlacher-managing-director-trenzyme

Reinhold Horlacher, PhD

Managing Director & CSO

We would be happy to provide you with support on your protein research project.

Get In Contact With Our Scientific Experts

Design Your Protein Now!

Use our user-friendly protein configurator to create your individual protein according to your needs. Click on the button below to get started!

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Questions or Individual Quote?

Let us know your questions and requests by simply filling out the following contact form. Our scientific experts will get in touch with you immediately to discuss your request.

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